# $NetBSD: Makefile,v 1.8 2023/08/14 05:23:52 wiz Exp $
#

DISTNAME=	rna-seq-1.2.2
PKGREVISION=	1
CATEGORIES=	biology meta-pkgs
MASTER_SITES=	# empty

OWNER=		bacon@NetBSD.org
COMMENT=	Core tools needed for RNA-Seq analysis

DEPENDS+=	fastq-trim>0:../../biology/fastq-trim
DEPENDS+=	fastqc>0:../../biology/fastqc
DEPENDS+=	biolibc-tools>0:../../biology/biolibc-tools
DEPENDS+=	gffread>0:../../biology/gffread
DEPENDS+=	kallisto>0:../../biology/kallisto
DEPENDS+=	hisat2>0:../../biology/hisat2
DEPENDS+=	rna-star>0:../../biology/rna-star
DEPENDS+=	samtools>0:../../biology/samtools
DEPENDS+=	igv>0:../../biology/igv
DEPENDS+=	fasda>0:../../biology/fasda
DEPENDS+=	${PYPKGPREFIX}-multiqc-[0-9]*:../../biology/py-multiqc
DEPENDS+=	webbrowser>0:../../www/webbrowser
DEPENDS+=	curl>0:../../www/curl

META_PACKAGE=	yes

.include "../../lang/python/application.mk"
.include "../../mk/bsd.pkg.mk"